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, Supplemental file SF1: Full annotation of predicted gene models three Microbotryum species
, SPr1) or not (non-SP); 3, Orthologous 933 group ID (xxAg*, gene model was not clustered into an orthologous group); 4, annotation class 934 (AnnotR1); 5, protein length; 6, signal-peptide length (lengthSP); 7, average dN/dS ratio; 8, 935 positive selection (YES/NO), vol.9
, Supplemental file SF2: Interspecific selection tests (SELECTON) on three Microbotryum 939 species. Tab separated file. Columns: 1, Orthologous group code (Agogue); 2, annotation class 940, p.941
, Bonferroni-adjusted p-value, vol.7, p.942
, Supplemental file SF3: Intra-specific selection tests (MK-tests) in three Microbotryum species
, SP in species MvSl (100), MvSd (010), MvSp (001), all three, vol.2, p.946
, non-synonymous polymorphisms in population, vol.4, p.948
, non-synonymous substitutions between species 1 and 2 (D_nonsyn); 10, 951 synonymous substitutions between species 1 and 2 (D_syn); 11, neutrality index, vol.8, p.950
, Supplemental file SF4: Per-gene substitutions between Microbotryum lychinidis-dioicae strains 955
, Lamole and 1318. Tab separated file. Columns: 1, Orthologous group code (Agogue); 2, 956 annotation class (AnnotR1); 3, codon alignment length (alnL), vol.4
, Supplemental file SF5: Normalized expression of Microbotryum lychinidis-dioicae Lamole 960 genes across infection stages and mating conditions. Tab separated file, Gene ID, vol.2, p.961
, Benjamini-Hochberg's, vol.6, pp.7-11
, FDR) across infection stages, pp.15-17
, Hochberg's corrected p-values across mating conditions
, Supplemental Table ST1: Isolates of Microbotryum species and accession numbers of population 966 genomics data, Spreadsheet. Columns: A
Fungal species; C, Host species, vol.D, p.967 ,
,
, E, sequence read archive accession ID